NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10029149

Scaffold Ga0181577_10029149


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10029149 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4004
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F030110Metagenome / Metatranscriptome186N
F064230Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_1002914912F030110AGGAMAKTRAQLNRAARQAEMRNKIEASGYESHVHEVVKKLLDPDLEFDSIEVQRMKSAADLSIKMMAKFMPDLKSTEITGADGGDLVLQIQRKRFDGDD
Ga0181577_100291492F017135GAGGMIPIISCPLPGGGQALIKTQDIGGATSGKNPKECDVYVLGWAANGITVDLSLDDFAEIWVSALLDDKTQEYEIVFTADEVH
Ga0181577_100291493F064230N/AMKSYLPQMKCTECYKIMVPQFKKDYPHKLEGWSCDCGNSEKAILRERQYTREQDGDD
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