NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10058778

Scaffold Ga0181577_10058778


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10058778 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2721
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013880Metagenome267N
F016522Metagenome246N
F034164Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100587782F034164GGAGGMSKPKRADPTPEEIAAEAAKIRAEWPEHRWRKEEPGEPPVDLPVIKLDKRRNGVLM
Ga0181577_100587784F013880GGAGGMARFIPESHHGNSLTWLYDKMKVGDEARVLRSRKIAYDLLRSAWYRRGRQEKMARGEDVPWLYLEPAVARVNGEVIEATMVVRVADEVECWAKRKKFLKEGVT
Ga0181577_100587785F016522GGAGMVHMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPRQGDAQRFGSEPEARAAADAVDHAVRSLGLCQVMEVA
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