NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10061433

Scaffold Ga0181577_10061433


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10061433 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2652
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013880Metagenome267N
F016522Metagenome246N
F095405Metagenome105N
F099216Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100614332F095405GGAGGMGGNCQGMGAPLCPRCRCGLLESADTEISEWGAVVHCEECGCDSMVYVDPDGSYTSYCFSGHSWHMLNGCKVCSLCGAEDEGGL
Ga0181577_100614334F099216GGAMQVHDIEIGQSVEVPNATVKQGQRGTSWARRKANSCRRFAVTESGSGVIIERLPDRELVTDAIRKGGDKVFVRQSVETARQAIRRAIRAGELSGFWYVEPSGNGSMLQQMATQEDVDAAAAEYRRWVKARR
Ga0181577_100614335F016522GGAGMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPRQGDAQRFSSEPEARAAADAVEIAVRRLGLCQVVEVV
Ga0181577_100614336F013880GGAGGMARFIPESEHGNSLTWLYKKMEVGDEARVLRSRKMAYDLLRSAWYNKGRPEKMARGEEVPWLYLEPAIARVNGEVIEATMVVRVADEVECWAKRKKFLKEGVT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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