NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10078819

Scaffold Ga0181577_10078819


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10078819 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100788191F013311AGGAGGLAFLGDFGKFFNLGSSAEVLGQAGEALGSFFGGSQGEQIGKTIGKTLGAATSNLQGDSSVSPLSTADQALEQSAVPVSQRGNVPQETSSTQGITGAQPMQAGVFGIPGAIQGIRALAPQVTKFFGGTTGAVATGLGTGVAVNMLSGSGMSREKPVLTQSRRNKARVRQLVNFMGIEGAANFLSQQSGTNVTGNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAAPRRASSTTLIKN
Ga0181577_100788192F002374N/AMNQVLLYVSLVIATVSFFLCCYACARVGKLLNSVKGLDWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVHDINKQIGG
Ga0181577_100788194F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVDGQPFGVLNGAYLNNDLLTTGSQRNRVLVRFTNDTAATRTIRCGVFIG
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