NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181583_10004304

Scaffold Ga0181583_10004304


Overview

Basic Information
Taxon OID3300017952 Open in IMG/M
Scaffold IDGa0181583_10004304 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10447
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F074857Metagenome119Y
F087434Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181583_1000430415F073494GAGGMTDNQWESREISLWVNNDESLYLLARRSESSYDFFEGLKKIGVFQLGNIKLTLHNVKESWEDAND
Ga0181583_1000430420F087434AGGAGGMEHKGMKYLDAHKRWISQAKELIPQVPDFQPDFVKSLDERIESGIPLTPKQFKSLKKVVWFLKKQTEDK
Ga0181583_1000430423F032640GAGGMGMRIYHSRVIDNRISAMILEGLEGKAFNRKLTKRDRVVSDGNGKVSVFLWNTEICQIDAQANKITVKSGGFETVTTKSRINALLYGWAKGNPAIFQRNWVWYLETECPLTKDEKTTEFQGVARFPLKYWR
Ga0181583_1000430424F074857AGGAMTNQMNMRKTLSYREVAEQAQRLSEMAYLEACQPKELRNQALMNHCYKQAKRLTNRLKNAGYWKNSVISLG
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