NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181583_10149117

Scaffold Ga0181583_10149117


Overview

Basic Information
Taxon OID3300017952 Open in IMG/M
Scaffold IDGa0181583_10149117 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1566
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031466Metagenome / Metatranscriptome182Y
F032961Metagenome / Metatranscriptome178N
F034111Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
Ga0181583_101491171F032961N/AMSLTEKDKIYKYVWQCAYQRRYFAMCKGDWELYNREHETILMCLNIAKWTEFDTEKPKYFTKYQE
Ga0181583_101491172F034111N/AMLELTLASLLNTMSADFCALMETEKDVVKATFLAYSMANKQYGPDNVIKIINNASPIEIKSLAVSSVITKCPNKL
Ga0181583_101491175F031466N/AMIVLTLGLLMLCVGAIIVAGYIHGDMHFAKVLEHLKKXHNA
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