NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187817_10041574

Scaffold Ga0187817_10041574


Overview

Basic Information
Taxon OID3300017955 Open in IMG/M
Scaffold IDGa0187817_10041574 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2814
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009421Metagenome / Metatranscriptome318Y
F024151Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0187817_100415743F024151N/AMAIAADERECTEQLARFFPKLPAVRIPVHVTPRRYGEASRKEATVVEFGTPEYAIFLSQLALEFDDRIRLVRAGGGRSVEAAVVALQYHQGRKAVAVRFLDGPCEWMMHP
Ga0187817_100415744F009421GGAMDDAPVNKTITTLNPPAPPKADISKQAPWDELRSVFPIYLALAKHLQMEIPFPQNKRVLPEKADTQLHTQVQTWLNNMDAQVQVHQLRHLLQMTTLN
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Institute for Fundamental Biomedical Research
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