NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187779_10000005

Scaffold Ga0187779_10000005


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10000005 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)187348
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (80.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009646Metagenome / Metatranscriptome315Y
F099608Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_1000000524F009646N/AMSKISRILLTGAAGLLSFQAFSSSTRAQRQSQAEAEKLTWHTLEFAIVRFNENAPNSWNIYHSEKKGVFLVRLWKRYLLVNVQDEEVYDIDPQKIKVTGDSAEWSYADLPDKPIETPDFVERNVGNMERIRFRLGKDGHFLELQIPLGPNGRPIY
Ga0187779_1000000546F099608AGGAGMRRQVIVLAAMVLSATFVSADQKPAQATIISQTSVDCGTKKHGKKESTNILCQQYTVRTTTTEYQIRQQKPGDMNIIPPNTPIEFTLSKDKMKFKANGKKYEFLVVGTSAISNPPAASNPAP
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