NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187779_10000073

Scaffold Ga0187779_10000073


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10000073 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74666
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (69.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002531Metagenome / Metatranscriptome551Y
F060174Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_100000734F060174GGAMSRRLTVSFSLAVLLLLSPVAPFLPAQPNHEKAVWNYDGGLQMMTDGDIPSGPCFRIVGRATAPDYFNNLKRVDTTTGTLIERGHDIVTEFPVQMHLSFLMYDFPCDTGLQNTGTRTYLTKALVSTLRLSFYWKHGMHMNPAKGIVPRHFETRPVTPYATQVAADLPQRFEWEFEFDLPSAGIPVTDSLVLVLRTPDGHIAARAAARM
Ga0187779_1000007361F002531GAGMASAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPAPAAERVFYHLQDVREFLNVLGIGTQYVREALRELTAGRSAFLTNIALTEKAIKNAGFGSLLAAARG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.