NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187779_10045906

Scaffold Ga0187779_10045906


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10045906 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2541
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007903Metagenome / Metatranscriptome342Y
F014936Metagenome / Metatranscriptome258Y
F023021Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_100459062F007903GGAMNSSELKHLLKNYLETKYQLPLDYFEIEGQMSPDTNGDIGVTGNYRKRTGDKKIFFTVTVNLTSRKVTNLQEY
Ga0187779_100459063F014936N/AMSERIFSCSCQKCGTEFEFTGSYEKFNEFMSSKSFTCRGGHTENHSPRAFLKILSISEPPRSTLEWKPTEGRNYVNILDYQTVRISGMQIDHLGSGVYMDKRTRKKYDYEEDTKGDRHYYEVQT
Ga0187779_100459064F023021N/AMKKEDHAALKKWIKKRYTLLFLSVNERTDHAFAIVDASSLSPDPVEQSFDCKLTLSTPRQAENDFLRTADLSQGTIIFDSHGWKKRLLEISRR
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