NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187779_10196965

Scaffold Ga0187779_10196965


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10196965 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1259
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_101969651F014996N/ALSGSGGTNRVHADIDALKGFHEALVRFRYAQRGVAERGGDQIEMTRASLAAKASRWQSRLEQCQAELDACRAGGGEEAADCSAYARAVEQTGERLEHIRRWQQRVDIEASEFGGTAIAYLDLLDSDLPRAESQLLAIITSLEAARRVPAGEK
Ga0187779_101969652F001698AGGAGMSGVINDIDALAEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRLFGEALDEVTPGITVYLAATEGHEAHLAALIERLRSYLETGLGAGAGAGAGTSRTETDRGKPT
Ga0187779_101969653F006905N/APLQEISAAMAPEAISRAIDALRAVLLEVPEDVPDRNREVNRFLPPLAASVHAIMRDQGIDIPYSSRVEHIATGGVARYPDIAQLSLDEIAAEFEGTCHRPDSG
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