NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180429_10014640

Scaffold Ga0180429_10014640


Overview

Basic Information
Taxon OID3300017960 Open in IMG/M
Scaffold IDGa0180429_10014640 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5820
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y
F090093Metagenome108N
F091957Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0180429_100146402F090093GAGGMSLRTIVALGAIYIAVFGLPDVQLPNISPSAPKRPDAEKPSAELQEAVADVAAICERMSTFDRLVWMSTWEDCSAIVAGEDEDVSVTFDNTLALRLFTDSTFQVAWNRLANASGKYRGLGEAVEKAFANVIGNEVRPWSAEVADDVIDLYDALAWAGARSE
Ga0180429_100146403F049303AGGMSTFLSDPVRVLAVVAAVAVLVVPYLPAIAKQLRAAWSSLPTVPQPSNDGISVSDLTTVLDLANRLRVLGNEKATDLAKQLLDAMLEVPQK
Ga0180429_100146404F021885AGGAGMNIFEKLRLLAEWSPLLTFAQQLAAEEDIHAKAVIVADAMEWVASRTEIEWDDELASHISDILVSEEGEAFVRWILDRMQVNDVDVSE
Ga0180429_100146405F091957AGGAGGMRGNTTAINVATLRLQWSSHSSMASICSFWTISRDQLIRLRDVHRLPKRHDRTKRRKPEREPEPSRAELRASEATLDLAPRIAKRAAIVQARWSDAVRENRHWRKPQLFSVPLVQVDIEPDDDSDL
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