NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10000003

Scaffold Ga0187778_10000003


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10000003 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120896
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002063Metagenome / Metatranscriptome597Y
F003528Metagenome / Metatranscriptome481Y
F003702Metagenome / Metatranscriptome473Y
F008148Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_1000000329F003528AGGAGGMAGRFSAALNTIYDILITDADGQHLQLESFKDLESAKRRFPSIAAQYPGTKIALWNRETRIILAETDGY
Ga0187778_1000000332F003702N/AMKRHILTILMSFAASVISGAVFVVALFHQFAFVEIAASLLTGLQVFFLSSAIGDLLDEKKEPNRVRNSAVVLATAFLVAFYSVTRYFH
Ga0187778_1000000342F002063AGGAGGMIAMLHFAILAIATILAGFVAAGMNWVCLRAACVLMQPATSRRITVRTELARGSAQLARAYASHR
Ga0187778_1000000365F008148GAGMPVIAPQLTLQESATAQQETNQSLSIAEKNLAAVRGKKLNAAQSDMVSKISGFLKDAREAAQTGDWSRARSLAKKAEVLSNELIGSL
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