NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10000011

Scaffold Ga0187778_10000011


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10000011 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100261
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (83.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001811Metagenome / Metatranscriptome631Y
F002291Metagenome / Metatranscriptome574Y
F006031Metagenome / Metatranscriptome383Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_1000001114F006031GGAGGMASRVINALGLRSSSDKTTVRTPIGDYRLEKAQQVGPGLPVYPAASLVLPGPEAARLAEVGIDQPQVVSSTYHTNASREFVLNWYLEHLSAEFARQDAGPKKLPEEFRNSHFADEDITFVGERGDQIRVVDLATDDGGTKIILLRSAKPPSPQSSSSK
Ga0187778_1000001157F002291AGGAGMLWAGEDPALHAALLEQLQAAEIPFTDKTLGDDEVAPTADPLPIDWKPRFGFEVAVLSTDIPAAREILEKLLEEEPADLEIPARDEAKAEEPALVVSTEEHPAVEVWSGNDDRIAQFLTAAMQENEIPIHLEMLGEQTKFSVSAANEKRAKEIVREVVEGAPPE
Ga0187778_1000001163F001811AGGTGGMSGFASSVLSCLEREKLEEELFEVRMRGRNLSRLRRLTAFERAALEEREQTARARLRDHEMEHGCER
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Biomedical Sciences Research Center "Alexander Fleming"
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