NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10000067

Scaffold Ga0187778_10000067


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10000067 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63004
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (88.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000430Metagenome / Metatranscriptome1149Y
F001311Metagenome / Metatranscriptome726Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_1000006711F000430GAGGVYFMIRTRTQKAAPAAEPESGRPAGSGEEWLGRNHSSKRRLWERLNPLSRKQIRLIAEALALQQTHAQLPEPLRARLSTVHQELERLTNRIRALLAEVARRTPPGT
Ga0187778_1000006751F001311GGAMATQPEVTSKNSAPATPPRQQSSPERRGTRRCKITQLMRIRPSDPNKQHFEDMRGSVSVSRSGVYFQSSEPGYEVGMRLFITMPYSHDPASMNREYLAEVVRRDVLPTGMFGIGIKILMELGIQHSYSFGAASGR
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Institute for Fundamental Biomedical Research
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