NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10010935

Scaffold Ga0187778_10010935


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10010935 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5658
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016741Metagenome245Y
F045975Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_1001093510F016741N/AMPSFAGAFPELCFDLASELRATGRTDLARELEASSVKSVSYDPETDAGLVALEAQRELNAVERNVVGQKLGQVIAFGGARYASMQLDNFGRIVAVELQAPPRELRWKLMRLTSSSRW
Ga0187778_1001093511F045975GAGMEAHAADVLQSLVSRRGCAGLDERLPVPRYEVTVQGRGIAVPIGGAVAIGFLRLVQLRARDPVEAEIRAVELVRSDWASSPNAVRNLGDAPHLTISRIGSLHWWHRLLGAPRGYLFFGEDGVQMPAGPSPP
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