NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10022629

Scaffold Ga0187778_10022629


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10022629 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3849
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023425Metagenome / Metatranscriptome210Y
F078990Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_100226291F023425N/ADEDEKQLPSNAVGNALAHRILAWDSIEHGDFDKGLTELGNAAALNRNDMWLRYYLSMLKYRMAQSKHTEIQGLANMMLDLRAVLEWYPEMADAYDLLAVARNEGGTSANAMQAERAAMNLSPRDERYVYHMAQIYISGKQWEAADDLLDRLRGSNNPQIAALARETQSQIANQRKYGMTLGTAAPQTKLAPQKSPFDVLEQDAAKRAEEEKAAAQSGSVADRRPTKFFKGRLIAVDCSKAPAATLTVASEGVVLKLRAADYKSLLLIGADDFSCGWQDRQVTVNYKPGGLADGDLVSLEV
Ga0187778_100226295F078990GAGMEANSYPFLGLSGGADAFNCFRKSRLMLASNFLVGTRFSSDLFSFASIGDAL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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