NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10029895

Scaffold Ga0187778_10029895


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10029895 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3329
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_24(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023506Metagenome / Metatranscriptome209Y
F063273Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_100298952F023506N/AMECKAKFDSKYDAFDTSAVTNVGQVLQNFIFCQRCGKRVSVVVFDIR
Ga0187778_100298954F063273AGGMRPDVFRPVVPQGWFILAYEFVEAFSSVVPSVRISQVLAILGIVVDVVWRIISRNFTHPSFIDIPAALLVGFYVGKRPSIRKSDRARKSKWIRLS

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