NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181581_10012579

Scaffold Ga0181581_10012579


Overview

Basic Information
Taxon OID3300017962 Open in IMG/M
Scaffold IDGa0181581_10012579 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6394
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068868Metagenome / Metatranscriptome124N
F098266Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181581_100125791F098266N/AKWSEWPYNIHILLIKMRENKMADNAFENMVEQDVEIVLDEEVKTEFYWRDWYNGTLFINGMSIEAMYRVRDKLRAIYGNVQMHRCGRTDEYAFDFCE
Ga0181581_1001257910F068868AGGAMKLLTTLFATLFLVACGAQDAEADDNWNTSEHNFNINGDKWGLEIRAIGNDDYDHVEGSLKLTDKLTAAVRYAEDGETTEIRPKLTHSLLSVGPVGLKHRIEYRYFEGDATDDSWRYRIIAKMDVGPIWVKAQPRWELGGNNTNDMKIDDIKYEAGYDWTLSSDENSSAVFTPYIQYQTAGDEGDWAKEHMILGTRLAVKF
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