NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181581_10029830

Scaffold Ga0181581_10029830


Overview

Basic Information
Taxon OID3300017962 Open in IMG/M
Scaffold IDGa0181581_10029830 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3981
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0181581_1002983010F006971GGALIYQNIEYKKHQRVKFVIPTDFRIIDPQTDEINWRYGVIQFFSKKTKAAWILEDNAKKNIQISLFCVLPVN
Ga0181581_100298307F058532N/AMNLNKNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSIDKLSNFYISKSKIDLLREYVDKYINVEAGCVFMNCVPNKFATINIKHIKDSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKNYNIRGFNGICCR
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