NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181581_10046248

Scaffold Ga0181581_10046248


Overview

Basic Information
Taxon OID3300017962 Open in IMG/M
Scaffold IDGa0181581_10046248 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3114
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037431Metagenome / Metatranscriptome168Y
F067686Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181581_100462482F067686GGAMSSFLSHYELPEFLDPEVKRRLLKIGMDLKDEDWITHKSTRTGKPTVLNFYDLNMKFHGRNCYLLMIRPNAVQEWHTDGGKRNTALIYPLSEDYAPCSFENNKTSKPIFLNTQVRHAVFNNDRKRINLNISFEEDIEDCIEFFKCLNFFKGNTAYEFDPS
Ga0181581_100462484F037431GAGGVKYKTDRPFPQEELKSMDIIHDPNTTLFEDQNEESYVVDNFVNDNECETLASFFRDNFEAIGHTINDHVLHITYPMLIAKISDIVRPKIYEHFGDDVIFYSDVGQSDPMSVGDQFFKSIKPYVLHTDAITHITGYLPYKDIIIPMDLDSIPVSEYVTFNQRYRGRATHFMRGRDIGSFANYANVVRHQTYAEYGVENLEHNARDQQILKDIMPAHIPMSIYEGLSIEKILPWRPKCAIIHDASVLHAPADYRKHGCEYKIGLTLHLMKRDANYNNRLEGYYTPFSRYTKPLIQA
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