NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181581_10093650

Scaffold Ga0181581_10093650


Overview

Basic Information
Taxon OID3300017962 Open in IMG/M
Scaffold IDGa0181581_10093650 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2076
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005819Metagenome / Metatranscriptome389Y
F050019Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0181581_100936501F005819N/ATSYNISMDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGASRSYEKVSNNFTITDRRVKQIAAKNQWQDRIKAINKMLNEQIINEVLAQVGETARDIADELKPLIFKILNEINERDLASMNPTELKGILDICYKMISQIYGLGSPQVQVTQIEYPQIKFKWDWEQEDDSDY
Ga0181581_100936503F050019GGAGLGLTDNIRNFFSSQEVNTEKKSYNNFPTSQVVFPFNSDAGFFSGVNQMSPEGNSAALACLNVLGTAFSEPPLKVYLKSQEGDEYIHNHPAQQLMDNPNPNMTSTLMNNYIVTSI
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