NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181581_10226882

Scaffold Ga0181581_10226882


Overview

Basic Information
Taxon OID3300017962 Open in IMG/M
Scaffold IDGa0181581_10226882 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009303Metagenome / Metatranscriptome320Y
F037991Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0181581_102268823F009303AGGVESTGRTLEVGGVMLNVLKWVATATLIIGFGFFSAGFGFGWFLQIGGGILWLIAAVLMKDKPLIVTNGLMTTAGILGRLLG
Ga0181581_102268824F037991N/ALNKVVEAVKYARSQAHREMANTLKSGDTVFFDGKYGKTVKGTVIKTAIKYVSVDCGIEGKWRVPAAHLRLAA

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