NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10002499

Scaffold Ga0180437_10002499


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10002499 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29169
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.02%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F015852Metagenome / Metatranscriptome251Y
F045065Metagenome153N
F047026Metagenome150Y
F060835Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_1000249926F047026N/AMAIFLTQNGEPDAYGLAYNDNAYVIKTTNYTPTVRFRIAILPENYPIEAGIGQVRVYPTRAEDGGTVYLDRAFFDPSRFLQPYVKGQVDIQGANHNGFFVANQIHKEYRLVIQEEEKDANGVYQGGDLIFTKLKSVWNGVRNEIDWLDFNYLDYIINNSASNTKKFLTDSPRTVRIDSAQSYHLYFIANERFGAYQYNIKAYSGLNASGSLLADGVVSNNIATADSWDKIYFRIPVGPYDIGNIDPSLYTDSLLGSTPSTALNNAKSYTIHLEDNTNTQTSERFTFNVGETCTKYNTVRIHFLNRLGGYDAFNFYLKSIHTTEIKKDSYDQEKHDWTGNRYTYTKAARGKTDYNVGLNKRLTVNTDYLSEAESIWLEDLVTSPSLYIEENNELIAVNIDERSVTKKTTLNDKLMQYTFQINYSIKNRRQRG
Ga0180437_1000249939F045065N/AMTESQKLVGARGSKVLVGTGEHTGLTGYAIIVQEDTVIGTYEVDGSDAKAAYGLDTDPTLKAGAYIVVPSGDVITKITLTSGSVIVYNG
Ga0180437_1000249942F006492AGGAMDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQDANDKHVEKFSDVISDNTKALVEMRSELKENRCKM
Ga0180437_1000249944F015852N/AMAFLLGVIVAAKGCKTAPVIKTIERPVPTIEYVDRWRTDTVRFVKRQVITTVDTIYREKVVNRLDTLLLIDTVRIVEAWLTEVAKYDTAIDETCYYARIAWDNYQNRTENLTVSFQPKKQPLRWALGVHGLVGLQSDFSENYTPLLAVGLQATVKKTYFGLNYGYNGQHFVGVGVGRNIINR
Ga0180437_1000249945F060835N/AMIYNENPIAREAIDKLLKKNAKIQSNLGVDSTELERFQAKIDWADLLRKIRSIDPEFADVVQPQ
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