NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10009658

Scaffold Ga0180437_10009658


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10009658 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11895
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (72.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010536Metagenome / Metatranscriptome302N
F051550Metagenome144N
F068835Metagenome124N
F105332Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_1000965816F068835GAGGMANLFNGYIDSYEMLDFLSDRLQDELNKINTEKKRSISSWSDIRYARYDEQRYVYLQQHKYLQSLYKELEKAELLDEMAKEGTE
Ga0180437_1000965818F105332AGGAGGMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE
Ga0180437_100096585F051550GGAGGMDKYNNTFEERNKKNKYDMADEAMQNYLKKEGLVEKKDWLKLGTEPKDTPDMKMMWLALQILLMPDYIFVMKGKLYIAEVKGTLKFKESDFNKLTEMYNKAEKYDNVRVGVTYFAHPDADPVWLSYTKIKTQWNYDKIPMQYYPELDFEGNKKAYKVLLNN
Ga0180437_100096589F010536AGGAGMIDTMLSKATEGMLIAELLNRKNEKGVPFFMGKSILLTNGQQQLLAILPNIQILTTLEEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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