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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017963 Open in IMG/M |
| Scaffold ID | Ga0180437_10189543 Open in IMG/M |
| Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1628 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.3 | Long. (o) | -115.8 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F015342 | Metagenome / Metatranscriptome | 255 | Y |
| F025285 | Metagenome / Metatranscriptome | 202 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0180437_101895431 | F015342 | N/A | IKIKIMSVAANMPARNIKGNVQAQDKILYVANKLGLSSLKYMQATTRVVYDQSVTAANQHTFFEGSQSRSFPLSNLGANGNQFQVDEALLVEKIAFFEPDADDGQNFTALGIDGIKFDLIIGNKTVMKDVCVEQGGQQAFYSDGTIGSHVIDLEGVGILIPPQVEFKVVAKSYNTTARTATSIRLGCYLFGTGVLLNFNTSI |
| Ga0180437_101895432 | F025285 | N/A | MSQVSKLNMVNAKLGATMPGQQTTRYIYDSVESVAGQGTFNFFQTFANKTEFQTNLTTNKLDSSESMVIKSIFLSGTLTPLFSGHSNLNITVGNQVVLKDFNLAFNAGNRGVSYDRLHSGFNSSSQLEIRLLTDIVIPPQVNFKATLELAEGSQVLAAENVTIGFKGYGTIFSAGSTF |
| Ga0180437_101895433 | F000710 | AGTAG | MPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTSAAPGTIVDPAQLRITLIINNDVVIDDDVAYHYAISSTGGFSGGFPFFVPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |