NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10266808

Scaffold Ga0180437_10266808


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10266808 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1315
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0180437_102668081F025285N/ASQVGKLNMVNQKLGATMKGQQTTRTIFDTVTASAAGAVQYNFFQTFNGKTALETNLTTNKLDSSESMVIKSIFLAIDPGSDPQAGTLTAQGMMNLNIIVGNQVVLKDFPINFNAGGRGVAFDRLHTAPDNNIVEVRLATDIVIPPQVNFQANLLLAETTSLVDTKLTMELKGYGVIFSAGATF
Ga0180437_102668082F000710AGGMNDISYRQGLRTKGFQTTIPTTGADVTLSLSGLAKQFEGILLSSTSSAAPGAVVDPIQLRITLIINNDVVIDDDNAYHYAISATGGFSGGFPFFVPFPRRLTGQDTILLKVVNASAASQILNTTIYYRNEI
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