NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181589_10184750

Scaffold Ga0181589_10184750


Overview

Basic Information
Taxon OID3300017964 Open in IMG/M
Scaffold IDGa0181589_10184750 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1460
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007167Metagenome / Metatranscriptome356N
F042805Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181589_101847503F042805AGGMKVTFPGWLGWVEEMPEDEDNEEKVSIIEKCFMEITDVYAEKLLWPSIYMDEENGYDSEDNLERIWYYSDARSYLEEYLEENSYNRDYYHIMHVEATFHEPGKEPREVKFYVKEITCEIEHPGGNCSDEMFKWWVCEELYGDFDEYNRDIPEENYRIFLYCLNQAWQNVKALPECITKLIDKKRSTIKNDSLRVADEDGRTG
Ga0181589_101847504F007167N/AMEVKDAIFGFYLSPSSAVYIPKEGTETKKMKDGTIIKVPKHMYHPLTIEIMPRTDYKTIQYPKRKKFLFTMRDTKPVPADIRKYIENPEPEKLREALSIIQRRIRQMFETPVQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKA
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