NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187776_10037986

Scaffold Ga0187776_10037986


Overview

Basic Information
Taxon OID3300017966 Open in IMG/M
Scaffold IDGa0187776_10037986 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2704
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001400Metagenome / Metatranscriptome704Y
F013938Metagenome / Metatranscriptome267Y
F037530Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0187776_100379863F013938GGAMTDEKQARLEARARIDIRKLYEKGEITLKDHASAVGYLRGVWFDHLSDAEIDDFICREIRELEQSSPPSNPDLS
Ga0187776_100379864F037530N/AMDADDIMSEVNDRFEDVAGFRFHEDVRATIIFGQLVKEYGQAKVLRAFDVFLEEFPNPFEAETALHEFTTNFKRYSK
Ga0187776_100379865F001400N/AMNKQGYHARIFRHRDKLWVEIGQCMLASFDEIVELVDGVHSFEEVADLFKRRHAEELGGL
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