NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187776_10134996

Scaffold Ga0187776_10134996


Overview

Basic Information
Taxon OID3300017966 Open in IMG/M
Scaffold IDGa0187776_10134996 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1503
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017946Metagenome237Y
F022479Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0187776_101349961F017946N/AMLSPSRSLNLSADGLFSGLRHLRYGTGQDEPMPFTLTLTPQYVAREIQKKLPVSYLKVQRYAERNAEKLKAKAKLEKERGFNTHTLE
Ga0187776_101349962F022479GAGGMKIGLEQKAEIVRRIQVKNLDGTWAETYGALADEFGVSRCLISHIAKRAGLSRREGGQFKAHIAFAGKRYQPPAQLADMYQELRGKVGVTAARRLIEDHMRIRGISYEDVGNGSSVDVEPIAA
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