NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181590_10009279

Scaffold Ga0181590_10009279


Overview

Basic Information
Taxon OID3300017967 Open in IMG/M
Scaffold IDGa0181590_10009279 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8019
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Ga0181590_100092796F020191N/AMPDYEHIKAVYQTSLYKNILHEINGVVFPFSERWQRVGISLSGGADSALMAVLLCSIITQKLYTSEVHIITNIRCWKTRPWQKQNSLDVYAWLRTAFPNIQFKRHENFIAPDLEWGSVGPNIVDEYGKLKSGNQIELRAHAEYVAHKEKLDAWYCGVTKNPDKEFDGRLMDRDIEDATLDRLIKTHMGGLACHPFTYVQKDWIVAQFKKLGIMDLFNLTRSCEGDKEIYPEVFGDLDYKTYKPGSPVPVCGKCFWCKEREWGINKCQD
Ga0181590_100092798F017147N/AMENFNNFYKFKGGLAVTNMLYEPLVSNNKKIFCMNWNANKYFENAEMTDELYNYWFNQEVKYLFKLKNKKYIPEVINIDYSKRTIIFRWYDKSLNWLLETKQINNIPNWQDKIKAIKHDLENNDIYKINMYPHTFYFDDEDNAHIMDLYGCTDVDTKFLDIQFLKPLIRNDRFDKFIVNNQLDTHELYNETIKTNYAEWPGDFLNA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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