NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10002729

Scaffold Ga0187783_10002729


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10002729 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13107
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086430Metagenome110Y
F093545Metagenome106Y
F104733Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_1000272917F086430AGGAGMVETKCRSASGPEEIINKRMQNSGGLEADKTIKSGEGVRRVFHNIHLSGHQNQHGSDNKGEGDICGKPRGVV
Ga0187783_1000272921F104733AGGAGGMGAGGGRSVMAKPLIAAFVLAATAGLLAGSARAADLGVPGPGVQAAECGPCGPCHVGYDFHPELRSTYGIAFDPRNFDTTQPYYYYGPVRAWPRYWCEHAVYFGKGKAPPPVEAPLPIVT
Ga0187783_1000272923F093545GGGGGMSKFIVLGVALALLAAGTAAAFKLTHRQALAATAVDPAILHMQLQRAHEEMALP
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