NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10004253

Scaffold Ga0187783_10004253


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10004253 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10604
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000573Metagenome / Metatranscriptome1016Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_100042539F000573AGGAGMSLIAWLRRLVVSLGIGLTSYLIMLAIMVLSIVYDRELEPVITLAFDTGRGILTGLDTLSAGSHWGQVAVNHLRERVNMTHVVLSIPAIVIASVIIGIPLNRLLGGTRSALQRITIALTSVPATVVLAIVLFSFNALAPDSYAGLLRFADWVWRESLDALSGFGDTIPAARKLTNAARQGFSGHHFVIMALCSMIASFLVNALFALAFNPRRQPIARRRLA
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Biomedical Sciences Research Center "Alexander Fleming"
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