Scaffold Ga0187783_10015102

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187783_10015102

Scaffold Ga0187783_10015102

Overview

Basic Information
Taxon OID	3300017970 Open in IMG/M
Scaffold ID	Ga0187783_10015102 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5696
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006521	Metagenome / Metatranscriptome	371	Y
F011028	Metagenome / Metatranscriptome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187783_100151022	F011028	AGGGGG	MRVLLALALTLICTAVFSHGSEQWIRDAKLVDPVSKIFCCGPDDCGVLAPGSVERVQGGYKVNTGRWAGYDPFFVKWECALPFSPDGNYHICITSDESLIPDVRCFIVPPTAV
Ga0187783_100151027	F006521	GAG	MDPHEIKIGHCYSLSSVNGRHTIARVTNLFRITAMAAYEHSRTETLELNPVMVRFVWRHAAYPKGWSKMRKQLLLEEFLLIAEKEVADT

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