NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10027844

Scaffold Ga0187783_10027844


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10027844 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4187
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017451Metagenome240N
F040963Metagenome160Y
F061120Metagenome / Metatranscriptome132Y
F075215Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_1002784410F040963N/AAMWLMSSFNPTALEKRHHPRPPIDQTVTAEDIAHLHLQATREASAAAKDAKEDVAPVKHHKPKLIARRRNDYAYGNSWGYTEAYRNDPRGFFIH
Ga0187783_100278443F075215GGAGGMSNSYALVSALIFAIVAIAHVVRLIRGWNVEIGPYNVSMNVSWVALVVAGLIAIWGFMQL
Ga0187783_100278446F017451AGGAGMQREEMELLTVRATLWRMEIELLREIHRYRFAKRGRRFGSDVELMIVYGAAMFYYGFGTPVRALPIPRYLEMPRETVRRHMGRLVTLGLFERAEDLVPTKELREVEIERALRLLRNGTAGLL
Ga0187783_100278448F061120AGGCGGMAKLLLLPGVVLLIADHAFAQEPTASQCLLVRQAVAQYGFAAARRYALEHYGPEAVKTGDKCFTKQAARGARSY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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