NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10057936

Scaffold Ga0187783_10057936


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10057936 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2856
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003609Metagenome / Metatranscriptome477Y
F012365Metagenome / Metatranscriptome281Y
F020449Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_100579361F020449N/ADAFTPDAPAAGAYQQINQVYATLTSFTDPLFRSMADSLHGLERA
Ga0187783_100579363F012365AGGAGMAEPEYVVVYAATYPTVAAARKVLDTIENRHKEVAGTYDAAVIDKEDGKAHVVTRLDHPHVRIIPEWLGGGPLTRKELTEAAEELLAGEAGLIVVGEATIEPALDQVFTGTKVVKREIEATIGQITSELQEAFKG
Ga0187783_100579364F003609GGAGMSGTPADIIPIVIVPVLVLGFWLVIMFHAASHPQWRGQAPAESASTHALEGSIPDQRLSGPRPVVPGQRPGHAVDEVTPERAPASET
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