NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10120007

Scaffold Ga0187783_10120007


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10120007 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1937
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_101200072F008511N/AVSAPAPALAKRQRQFAVVRLADASEAVAVLSFMFALLLVFFPVLFPQMIVRSWQRGQLMPMMAVFAFLLDTCIYLRVGYLQSAKPKPVAAACLGSLPLLVVGGLSVLLRSAVYHSLSRGGTNLQARVDEEVLAHTYLGLVSAVFLPFLVIRLLQQFKAANS
Ga0187783_101200073F073232GAGMPGWTSLKWLLWTSLYLVPVVFLPLAISRTWVYQHGEELHLKPQQLFRRGELGLPSLILASSVIWNLFQSQFMVHTIALGSVIVGLCGIMAVTVWVETYCRQACGRDLRPERAWRDSRSLVLLVFSVAAVLQILLDRFASVVRQ
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