NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10169175

Scaffold Ga0187783_10169175


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10169175 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1609
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039236Metagenome164N
F066222Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0187783_101691752F039236AGGAGVTPTPADAPTTALSPYLSLRQAVRPAIVTYTVLASEQERAGALADEASQLLGTTRELLEAVGLVHLLSPDPGGQIPGNDQGDRQARLLAAYADAGVLWAKVVGHSIALADGLLGQARWHDVLRLADFLDNAGETAVAESLRERANDAIRGEYYARISAIHDKMSREETAAAIDTLRSLPKEFPERKLEIALRLRPLGASVKNVARLDRQSRNTVESAMSSLPDSADYYLAVLSDIYYSFV
Ga0187783_101691753F066222AGGAGVAEVNVSDIEALADFRSHLAEFNKDLSESFKAMRTHWRELGEVWRDDMYRRFGEALEEVTPGVDTYRAATEGHEAYLLALV
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