NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180438_10039723

Scaffold Ga0180438_10039723


Overview

Basic Information
Taxon OID3300017971 Open in IMG/M
Scaffold IDGa0180438_10039723 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4637
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016624Metagenome / Metatranscriptome246N
F037709Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0180438_100397233F016624N/AMNKLMLFGGAVILAASLIFTAARNSEFDAGYEIYRTTASDTITDTEADTITINPLLYSFWKYNHTVKGVQESGTIDLTLTIQESNALSGDEWYTIATDSVDADGEITDMFGDNYGVRQRIIITGAGTQSAIYTHRITLKKPY
Ga0180438_100397234F037709N/AMSDLIRVKFIKSPTGKFRMAYNAGHSGLVRKELADKLIKEGYAVLVESTKVETKTNTEAETATNTAKKRTTRKSK
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