NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180438_10324475

Scaffold Ga0180438_10324475


Overview

Basic Information
Taxon OID3300017971 Open in IMG/M
Scaffold IDGa0180438_10324475 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009459Metagenome317Y
F022875Metagenome212N
F044460Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0180438_103244751F022875N/AMNLTDDIKENIRVRAKAHINSTDPSTDHWDSIETPDGFVDFNIWQDDDYRGGEWIVTCYDTYCSTDDGCVHTDTSTFKRIAL
Ga0180438_103244752F009459GGAMSREITLEPTIMIEKLMFYIHQNEMGGDFIDPDNRFFPLYIELQKLLDHEQQKKYDLYVSVKNDETK
Ga0180438_103244754F044460N/AMEDTDEHEEVLEQLDESISALVTKGYDFFWSNNELCYDSELKVVRSDRPRVRPPTWFCYMNEDERERLTKEVK
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