NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0180438_10370686

Scaffold Ga0180438_10370686


Overview

Basic Information
Taxon OID3300017971 Open in IMG/M
Scaffold IDGa0180438_10370686 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1089
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0180438_103706861F015342N/AKYMQATTRVVYDQSTTAATQHTLFEGAAGRSFPLTNLGANGNQFQVDEALLVEKIAFFEPDADDGQNFGTNVLSYKFDLIIGNKTVMKDVVIERAGQQAFYNDGTATSKVLDLEGVGILIPPQVEFKMVVKPLDNASRSASSTRVGAYLFGTGVLLNFNTSI
Ga0180438_103706862F025285N/AMSQVGKLNMVNAKLGATMPGQQTTRYIYDSVTAVAGQTTFNFFQTFAGKTDLQTNLTTNKLDASESMVIKSIYVTTDLTQGLTGHSNLNITVGNQVVLKDFNLAFNATNRGVSYDRLHSSASIGKIIEIRLLTDIVIPPQVNFKATLELAEGGTLVGQSITLGLKGYGTIFSAGSTF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.