Basic Information | |
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Taxon OID | 3300017972 Open in IMG/M |
Scaffold ID | Ga0187781_10000002 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 266171 |
Total Scaffold Genes | 247 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 161 (65.18%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000138 | Metagenome / Metatranscriptome | 1954 | Y |
F000882 | Metagenome / Metatranscriptome | 849 | Y |
F001329 | Metagenome / Metatranscriptome | 721 | Y |
F003354 | Metagenome / Metatranscriptome | 492 | Y |
F005270 | Metagenome / Metatranscriptome | 406 | Y |
F005402 | Metagenome / Metatranscriptome | 402 | Y |
F009711 | Metagenome / Metatranscriptome | 314 | Y |
F011690 | Metagenome / Metatranscriptome | 288 | Y |
F048471 | Metagenome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187781_10000002120 | F005402 | N/A | MGNVMKRLKLDRIISIATLVASLVAIVLVLKRPAPVAQPQTPAAITEHAQSFDQKMAQFEQAAQQSQASGSTDTAKPETRQAAPATTQNPKAEVRINSDEISAVLAQSLGTAGASGLTPDSDVGSGAPVIKDQQVSFDGDVVHGQFLTEVAGKDVWITISGHIGEKDGYATFDPTEFKVGDLNVPVSLINPALQKKLAEERDRLKLPNNVGDVKVEKGELVMQQK |
Ga0187781_10000002142 | F011690 | GGAG | LRADSALDQLLHVNILHVPTSDTSRSALAIQMQAQQAMSGEQRFLLAIEMSLFARELARERVRSEHPDWPETDVVRELLRLAFLPKPLPARLQ |
Ga0187781_10000002158 | F005270 | GGAGG | MDPEFDSAPSGEVSSEDVAVVVAALEPDQLISAKKLHHCPRRRLTVTEKFLFWFLRIYLVFMFGVVIYQIWSGAR |
Ga0187781_10000002177 | F009711 | GGAG | MTLAIVLVIAAVLSLIVILGAAVARSLQISAGASFGSQIQPLDIEAFRKLADPAEDDYLRRRLPGSEFYRVRRARLRALAAYVRTAGRNAAVLVRVGQNALVSDDPATAQAAEQLVNQALLLRRNAALVLMRVYVAMALPNARLTGGSLLDRYNQLSTAAMLLGRLQNPAVPVRISIW |
Ga0187781_1000000218 | F000882 | GAGG | MPQEILSVAVWKPVPDMEAASLATFRELASIVAAKGYGRDLLYRDREGHYVFLRYWKSEETRHAAQEDPDMLRCWARLGNEIQIVRVYEILTEVAMDQIK |
Ga0187781_10000002180 | F003354 | GGA | MALKSALDDVRETTLASVSGLLGKLRYLASLRRTQGRYQHWGMEIVHGPEPAQRALKTAHAEVITEVLRAPLASLEQDLQESSQRAGIGAQAYVTGLRERFEDLLPGEWGDSPAVHHLSSVLAALSSLEKHRGRATRSIS |
Ga0187781_10000002191 | F048471 | N/A | MKIYLSLIAFFLQVLGLPAFASDAVGRFEVYCDGVGIFLANIEGAPAPGKLVLFSYVSFPPGTIGGRYFGQGRWSDAFVHRDGCVPDGRCESIAHGKVWIDAWDTTTAADAPPPKRISGKYEIDLNGKHLEGRFVAKEHHRRHPLRVCM |
Ga0187781_100000024 | F000138 | GGAG | MHMQLANSFRIPFTTLISYIPIIATVVTCFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERISATEAKVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWTQEMGKRILACTGHEFEGPIAACITFYASGRMFRTDWFRSQIQVREGRIASLEPSTMPTRRVRVIERKGPERRRDFVQDVTADVALDKTEAPPPPDEKFFVTGA |
Ga0187781_1000000263 | F001329 | AGGA | MSQNHYSTKPRRRAKSGKRKDPSAATMAKLRQLAAVEAQKSGK |
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