NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10000010

Scaffold Ga0187781_10000010


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10000010 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)158768
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (63.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F045224Metagenome / Metatranscriptome153Y
F092540Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_1000001015F000530N/AMDQQPDSTAAESAAPGSAATPRLTDQSPAITRPFRVKLRGSVLVLVRLPNRRCLRAKFQQLSITGGVINIAKPLEEKLEVELIFHVGQATIRNKAQMLFPMWATQGWMQPFRFVNLPDADREALDTNLKSYLGETALGETATAASVGA
Ga0187781_100000103F045224GAGMNEDEFLERGRASGGAGKATRAVSYTAKDFQLEVLGQLAEMQALTEALQESLTAELRRNEERNRLLRFDGRTLVALGAIALSLTGYVLQDARSSTRRDADIESMKARITTLERVAATNTEARIRTEVQLGELHQGQEEIKAMIAAHDLATKKAMPRK
Ga0187781_100000104F092540AGGAGMSTASTTIISNLKSATAPTGNTLKAAGTAGIDVCGMLALAQSKALELKVCLTLVARATDGADPNLTTINNILASLV
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