NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10000012

Scaffold Ga0187781_10000012


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10000012 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139820
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)103 (71.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001431Metagenome / Metatranscriptome696Y
F001511Metagenome / Metatranscriptome680Y
F003120Metagenome / Metatranscriptome506Y
F036990Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_10000012100F001431AGGMWSIEDVSAEKLARLFHHYRGALAHDFDCRNAEESAASWDRAPQSERRLMVAAARLALLELAATPAQSEASRPYFAKPGEADWGC
Ga0187781_10000012102F001511AGGAGGMEFVMFEDVDGLEVFVNPERVIWVREYSNQTTVISCGHDDKFAVRLAPAHAVAALGKSIR
Ga0187781_10000012139F036990GAGGMAIIAKTGCLSRALLLALVFGCTSFLRGATLGVYQHGTVVRMRMGDCALSHRALAAAFGPPAAAQMAAEVCPEYTLVSDKVVYVIVGRSSNQLIPLADVIDFRLHNNEMAVRVDDAKHEVKFSIKEMILRSEWDLVQKHIEDELNTPPHGVDDATAQERGR
Ga0187781_1000001260F003120N/AMAKRTVRFTATKTVRKPATVRFKTKSGKTVSFRAVKTFKKRQGVRFRAGS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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