NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10000456

Scaffold Ga0187781_10000456


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10000456 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29084
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001450Metagenome / Metatranscriptome692Y
F002623Metagenome / Metatranscriptome542Y
F008315Metagenome / Metatranscriptome335Y
F060173Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_1000045611F002623N/AVSVRAYTEADLDALRRMHEQQGFDYAFPDIADPVFVSKLAVVDDSGQAVMASLARLTCEIYLLADSKAGTPRERYKRMLQLHNVAEHDLLSRGLDDAHAWLPPSIAKRFGRRLEALGWVRDDAWTPYCRRLRLK
Ga0187781_1000045612F060173GAGMTGRRYYLTTYGDWLRHSARFANSHWLALSEQRNESSPILVLIEADEGVHLVLEDDKAFKALPHPLTQKPISEAAQIALAGQGIAQGATTFEVAESLGSKHPLLRYRVF
Ga0187781_1000045622F001450GAGMQISWGSLLVNEIRLIRVIRETHEAPAAVQERIARAGGSNRYGEPNFRVVWGGARLAWIGGRWTDRDANGHVIRETVELRRAPKYVPHNRWHVERWMPPEMYGSPEEWYEQTIEVEDGIQVAALGPYPTRGEYEHCFTLESADREFIPLSAAACDWIASAVEWARRQARGRRLGALNAREAVRERNWDRMADEVLNGDFDM
Ga0187781_100004569F008315N/AMRKFLDPYWWRFALALLVQFVVFIRWIYRRIRDDELNRAFIRDMATNHLPRIYELLEKLCGQRGIEQSPRPPIRWVDLRGRRNVPH
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