NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10002174

Scaffold Ga0187781_10002174


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10002174 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15000
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006237Metagenome / Metatranscriptome378Y
F056023Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_100021742F056023GGAGMRPVLLTLLLLASLPSFPQAADSSQPDGTISGTVLDEHGDPFKGVTVCTYMIGAPSGSKEARGDCLVTTDQSGQFHIDHVAMGTFGVEAIKPEDGYIAFAGTSVKKMVTLTPSQLSAAVALKLGPKPGVLLLPSVKDKLTGQPIASFQVGWEIPSPNGSLSGGETIGQGINRTIVPPEKYFRLTISAPGYEKWIYADPSDPSRPALIRFRPGEEKELLVELEPQAPAARQ
Ga0187781_100021749F006237N/AMARRPDPGKREEILSREHLQELSHNLAQMSMSAVLDFYQRAYRDCRIINSQTFPPARAVQELVQAWKQLRKWRR
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