Scaffold Ga0187781_10003774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187781_10003774

Scaffold Ga0187781_10003774

Overview

Basic Information
Taxon OID	3300017972 Open in IMG/M
Scaffold ID	Ga0187781_10003774 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11339
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F026928	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_100037743	F004502	GAG	VDGNAGKPTEQFRAAWQAAADAVNEWSRRVSAATHEAMDKIEPAFRAAVEAGRSAMTGEWRNCRCQCDKAHPDDQGVCDGRAVMTRRVRGADVSLCAPCAVAQGVAEMKP
Ga0187781_100037744	F026928	N/A	MPCPFFMFWQLCVALCEGEGEGVAAVAADPLLAAVVPDPDDDADEVVEAGVDELLVAALATAMLTPSPTPSAPAPTAAAMMILPRLDLNVSSSSW

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