NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10016982

Scaffold Ga0187781_10016982


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10016982 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5111
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050089Metagenome145Y
F067184Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_100169822F067184GGGGGMSSSRARFFLSLIPLLLLGLCPVVVQAQGNMSKPHSVTGCLQKGIEPGGFYIFGEDGTMWELSGEVDAVHAGHKVTVNGHVLHRSAAEEANFADYEKQEAKGKPYADFQVTSLKMVSDSC
Ga0187781_100169827F050089GGAMARQVFVFDAPPGREVCDFCSASPTARLYACRNFIIPRTKSAVFQHSRLEHGLRVIACAVLIDTGHWSQLTDRAFRRFCKKHGVSRYEEFEVREQFREIHQLFKEHMVKEV
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