NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10040984

Scaffold Ga0187781_10040984


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10040984 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3190
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011606Metagenome / Metatranscriptome289Y
F019711Metagenome / Metatranscriptome228Y
F075107Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_100409842F075107GAGGMKGLVVATLVGLTVLAAVPTSASAFQCLARSSNGVAVWGYGIFFSRATHFAIRHCRVAGGVDCHIAFCR
Ga0187781_100409843F011606GGAGMLLAMDFRRQARVCARLAEECDDLRLAERLRRMASDLLAKADDFEEFPHARAEREGRKTAVVS
Ga0187781_100409844F019711GAGGMTEFAMSVVEYFQDRRATTWETLVRIVFGTFMGGLVLLLILTYSGVPIV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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