NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10045816

Scaffold Ga0187781_10045816


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10045816 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3010
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022331Metagenome / Metatranscriptome214Y
F026464Metagenome / Metatranscriptome197Y
F037853Metagenome / Metatranscriptome167Y
F039836Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_100458162F022331AGGAGMQLSSIELRTLVAAQIASGLVGHVAPNSPQTSIDEVVQLAVRMAKALQNAAIKSMHEKDT
Ga0187781_100458163F026464AGGAMDQHPTRQMPDDELVEIADRPQLWISRDGYVKTLRAGLVRAAHITSQGRSPYPLESPSGVRVELAQMSRLWNRLGIVQEKGLA
Ga0187781_100458164F037853GGAMATSFSEAEMRALIAAQVASGLVAGLSLGPKSLDAEVAAIAETAVRIAKAIHDASVKSVQIR
Ga0187781_100458165F039836GAGGMQVAVGQQWAIFSSKAQRWAVATVISVENGTVNLKYRDYRGFCHLAAVEMLRVNDDLQLLEPLGEINPHHWHG
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